Professor John McCall's Outputs (108)

An inductive logic programming approach to learning which uORFs regulate gene expression. (2008)
Thesis
SELPI 2008. An inductive logic programming approach to learning which uORFs regulate gene expression. Robert Gordon University, PhD thesis.

Some upstream open reading frames (uORFs) regulate gene expression (i.e. they are functional) and can play key roles in keeping organisms healthy. However, how uORFs are involved in gene regulation is not het fully understood. In order to get a compl... Read More about An inductive logic programming approach to learning which uORFs regulate gene expression..

Solving the Ising spin glass problem using a bivariate EDA based on Markov random fields. (2006)
Presentation / Conference Contribution
SHAKYA, S.K., MCCALL, J.A.W. and BROWN, D.F. 2006. Solving the Ising spin glass problem using a bivariate EDA based on Markov random fields. In Proceedings of the 2006 IEEE congress on evolutionary computation (CEC 2006), 16-21 July 2006, Vancouver, Canada. New York: IEEE [online], article number 1688408, pages 908-915. Available from: https://doi.org/10.1109/CEC.2006.1688408

Markov Random Field (MRF) modelling techniques have been recently proposed as a novel approach to probabilistic modelling for Estimation of Distribution Algorithms (EDAs). An EDA using this technique was called Distribution Estimation using Markov Ra... Read More about Solving the Ising spin glass problem using a bivariate EDA based on Markov random fields..

DEUM: a framework for an estimation of distribution algorithm based on Markov random fields. (2006)
Thesis
SHAKYA, S.K. 2006. DEUM: a framework for an estimation of distribution algorithm based on Markov random fields. Robert Gordon University, PhD thesis.

Estimation of Distribution Algorithms (EDAs) belong to the class of population based optimisation algorithms. They are motivated by the idea of discovering and exploiting the interaction between variables in the solution. They estimate a probability... Read More about DEUM: a framework for an estimation of distribution algorithm based on Markov random fields..

Incorporating a metropolis method in a distribution estimation using Markov random field algorithm. (2005)
Presentation / Conference Contribution
SHAKYA, S.K., MCCALL, J.A.W. and BROWN, D.F. 2005. Incorporating a metropolis method in a distribution estimation using Markov random field algorithm. In Proceedings of the 2005 IEEE congress on evolutionary computation (CEC 2005), 2-5 September 2005, Edinburgh, UK. New York: IEEE [online], volume 3, article number 1555017, pages 2576-2583. Available from: https://doi.org/10.1109/CEC.2005.1555017

Markov Random Field (MRF) modelling techniques have been recently proposed as a novel approach to probabilistic modelling for Estimation of Distribution Algorithms (EDAs)[34, 4]. An EDA using this technique, presented in [34], was called Distribution... Read More about Incorporating a metropolis method in a distribution estimation using Markov random field algorithm..

Statistical optimisation and tuning of GA factors. (2005)
Presentation / Conference Contribution
PETROVSKI, A., BROWNLEE, A. and MCCALL, J. 2005. Statistical optimisation and tuning of GA factors. In Proceedings of the 2005 IEEE congress on evolutionary computation (CEC 2005), 2-5 September 2005, Edinburgh, UK. New York: IEEE [online], volume 1, article number 1554759, pages 758-764. Available from: https://doi.org/10.1109/CEC.2005.1554759

This paper presents a practical methodology of improving the efficiency of Genetic Algorithms through tuning the factors significantly affecting GA performance. This methodology is based on the methods of statistical inference and has been successful... Read More about Statistical optimisation and tuning of GA factors..

A lightweight, graph-theoretic model of class-based similarity to support object-oriented code reuse. (2003)
Thesis
MACLEAN, A. 2003. A lightweight, graph-theoretic model of class-based similarity to support object-oriented code reuse. Robert Gordon University, PhD thesis. Hosted on OpenAIR [online]. Available from: https://doi.org/10.48526/rgu-wt-1871759

The work presented in this thesis is principally concerned with the development of a method and set of tools designed to support the identification of class-based similarity in collections of object-oriented code. Attention is focused on enhancing th... Read More about A lightweight, graph-theoretic model of class-based similarity to support object-oriented code reuse..

Multi-objective optimisation of cancer chemotherapy using evolutionary algorithms. (2001)
Presentation / Conference Contribution
PETROVSKI, A. and MCCALL, J. 2001. Multi-objective optimisation of cancer chemotherapy using evolutionary algorithms. In Zitzler, E., Thiele, L., Deb, K., Coello Coello, C.A. and Corne, D. (eds.) Proceedings of the 1st International conference on evolutionary multi-criterion optimization (EMO 2001), 7-9 March 2001, Zurich, Switzerland. Lecture notes in computer science, 1993. Berlin: Springer [online], pages 531-545. Available from: https://doi.org/10.1007/3-540-44719-9_37

The main objectives of cancer treatment in general, and of cancer chemotherapy in particular, are to eradicate the tumour and to prolong the patient survival time. Traditionally, treatments are optimised with only one objective in mind. As a result o... Read More about Multi-objective optimisation of cancer chemotherapy using evolutionary algorithms..

An application of genetic algorithms to chemotherapy treatment. (1998)
Thesis
PETROVSKI, A. 1998. An application of genetic algorithms to chemotherapy treatment. Robert Gordon University, PhD thesis.

The present work investigates methods for optimising cancer chemotherapy within the bounds of clinical acceptability and making this optimisation easily accessible to oncologists. Clinical oncologists wish to be able to improve existing treatment reg... Read More about An application of genetic algorithms to chemotherapy treatment..