Skip to main content

Research Repository

Advanced Search

Partial context similarity of gene/proteins in leukemia using context rank based hierarchical clustering algorithm.

Bano, Shahana; Rao, K. Rajasekara

Authors

K. Rajasekara Rao



Abstract

In this paper we propose a method that aims to reduce processing overheads by avoiding the need to choose between natural language processing tools such as part-of-speech taggers and parsers. Moreover, we suggest a structure for the immediate creation of a large-scale, annotated corpus with disease names, which can be applied to train our probabilistic model. In this proposed work, a context rank-based hierarchical clustering method is applied on different datasets relating to colon diseases, leukemia and mixed-lineage leukemia (MLL). An optimal rule-filtering algorithm is applied on these datasets to remove unwanted special characters for gene/protein identification. Finally, experimental results show that our proposed method outperformed existing methods in terms of time and clusters space.

Citation

BANO, S. and RAO, K.R. 2015. Partial context similarity of gene/proteins in leukemia using context rank based hierarchical clustering algorithm. International journal of electrical and computer engineering [online], 5(3), pages 483-490. Available from: http://doi.org/10.11591/ijece.v5i3.pp483-490

Journal Article Type Article
Acceptance Date Mar 16, 2015
Online Publication Date Jun 30, 2015
Publication Date Jun 30, 2015
Deposit Date Sep 22, 2023
Publicly Available Date Sep 22, 2023
Journal International journal of electrical and computer engineering
Print ISSN 2088-8708
Electronic ISSN 2722-2578
Publisher Institute of Advanced Engineering and Science
Peer Reviewed Peer Reviewed
Volume 5
Issue 3
Pages 483-490
DOI https://doi.org/10.11591/ijece.v5i3.pp483-490
Keywords Data clustering; Biomedical data; Gene sequencing; Protein sequencing; Leukemia; Machine learning
Public URL https://rgu-repository.worktribe.com/output/2064139

Files




You might also like



Downloadable Citations