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Application of the comet assay in human biomonitoring: an hCOMET perspective.

Azqueta, Amaya; Ladeira, Carina; Giovannelli, Lisa; Boutet-Robinet, Elisa; Bonassi, Stefano; Neri, Monica; Gajski, Goran; Duthie, Susan; Del Bo’, Cristian; Riso, Patrizia; Koppen, Gudrun; Basaran, Nursen; Collins, Andrew; Møller, Peter

Authors

Amaya Azqueta

Carina Ladeira

Lisa Giovannelli

Elisa Boutet-Robinet

Stefano Bonassi

Monica Neri

Goran Gajski

Cristian Del Bo’

Patrizia Riso

Gudrun Koppen

Nursen Basaran

Andrew Collins

Peter Møller



Abstract

The comet assay is a well-accepted biomonitoring tool to examine the effect of dietary, lifestyle, environmental and occupational exposure on levels of DNA damage in human cells. With such a wide range of determinants for DNA damage levels, it becomes challenging to deal with confounding and certain factors are inter-related (e.g. poor nutritional intake may correlate with smoking status). This review describes the effect of intrinsic (i.e. sex, age, tobacco smoking, occupational exposure and obesity) and extrinsic (season, environmental exposures, diet, physical activity and alcohol consumption) factors on the level of DNA damage measured by the standard or enzyme-modified comet assay. Although each factor influences at least one comet assay endpoint, the collective evidence does not indicate single factors have a large impact. Thus, controlling for confounding may be necessary in a biomonitoring study, but none of the factors is strong enough to be regarded a priori as a confounder. Controlling for confounding in the comet assay requires a case-by-case approach. Inter-laboratory variation in levels of DNA damage and to some extent also reproducibility in biomonitoring studies are issues that have haunted the users of the comet assay for years. Procedures to collect specimens, and their storage, are not standardized. Likewise, statistical issues related to both sample-size calculation (before sampling of specimens) and statistical analysis of the results vary between studies. This review gives guidance to statistical analysis of the typically complex exposure, co-variate, and effect relationships in human biomonitoring studies.

Citation

AZQUETA, A., LADEIRA, C., GIOVANNELLI, L., BOUTET-ROBINET, E., BONASSI, S., NERI, M., GAJSKI, G., DUTHIE, S., DEL BO', C., RISO, P., KOPPEN, G., BASARAN, N., COLLINS, A. and M├śLLER, P. 2020. Application of the comet assay in human biomonitoring: an hCOMET perspective. Mutation research/reviews in mutation research [online], 783, article ID 108288. Available from: https://doi.org/10.1016/j.mrrev.2019.108288

Journal Article Type Article
Acceptance Date Nov 7, 2019
Online Publication Date Nov 9, 2019
Publication Date Mar 31, 2020
Deposit Date Nov 12, 2019
Publicly Available Date Nov 10, 2020
Journal Mutation Research/Reviews in Mutation Research
Print ISSN 1383-5742
Electronic ISSN 1388-2139
Publisher Elsevier
Peer Reviewed Peer Reviewed
Volume 783
Article Number 108288
DOI https://doi.org/10.1016/j.mrrev.2019.108288
Keywords DNA damage; Human cells; Dietary; Lifestyle; Environmental; Occupational exposure; Poor nutrition; Comet assay; DNA damage; Fpg-sensitive sites; Human biomonitoring; Statistical analysis
Public URL https://rgu-repository.worktribe.com/output/753539

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